silikonprocess.blogg.se - Pymol tutorial wiki

#PYMOL TUTORIAL WIKI INSTALL#

NCMI Baylor Workshop 60min.pdf - Integrating Diverse Data for Structure Determination of Macromolecular Assemblies - Andrej Sali

Wrks_EMAN2_08.pdf - Introduction - Penczek, PawelĢ008-EMAN-Wen-Jiang.pdf - Near-atomic resolution 3-D reconstruction of viruses - Jiang, Wen Python_1.pdf - Introduction to Python - Steve Ludtkeīerman-NCMI-dec08.ppt - What the Protein Data Bank teaches us about structural biology - Berman, Helen M. Workflow_tutorial.pdf - EMAN2 Workflow Tutorial - David Woolford Ludtke_1.pdf - Introduction to Single Particle Reconsruction and EMAN2 - Steve Ludtke Workshop on Single Particle Reconstruction, Map Interpretation and Visualization: Dec 10 - Dec 13, 2008 Talk-houston_jan10-schroeder.pdf - Structure Refinement at Low Resolution - Schroeder, Gunnar Schulten3.pdf - Molecular Modeling Flexible Fitting 3: Application to Ribosome - Schulten, KlausĮMD5127-3iyd.ppt - Deposition example EMD-5127-PDB-3iyd - Lawson, CathyĮMdepoTutorial2010.doc - EM Deposition Tutorial - Lawson, Cathy Schulten2.pdf - Molecular Modeling Flexible Fitting 2: Introduction to Method - Schulten, Klaus Schulten1.pdf - Molecular Modeling Flexible Fitting 1: Introduction to Molecular Dynamics - Schulten, Klaus NCMI Baylor Workshop 90min Sali.pdf - Integrative structure determination at pseudo-atomic resolution - Andrej SaliĢ010 Jan Mesoscale CryoEM Workshop.pdf - MESOSCALE MODELING OF MACROMOLECULAR MACHINES - Michael LevittĮMdepoInstructions2010.doc - EM Depo Instructions - Lawson, Cathy Xray-validation-for-em.ppt - Applied common sense: The why, what and how of validation - Kleywegt, Gerard J.īaker-workshop2010.pdf - De Novo Modeling with Cryo-EM Density Maps - Baker, Matthew HoustonWorkshopJan2010-v4.ppt - EM Maps and Models in EMDB/PDB - Abeysinghe, Sasakthi Schuhl, Steven Abrams, Austin Ju, Tao Baker, Matthew Chiu, Wah PDB_Items_for_EM.ppt - PDB Items for EM (EMDB Schema) - Abeysinghe, Sasakthi Schuhl, Steven Abrams, Austin Ju, Tao Baker, Matthew Chiu, Wah Modeling2010_tao.pdf - Geometric Algorithms for De Novo Modeling - Abeysinghe, Sasakthi Schuhl, Steven Abrams, Austin Ju, Tao Baker, Matthew Chiu, Wah Modeling of Cryo-EM map Workshop: Jan 14 - Jan 17, 2010 OpenMPI and PyDusa (day 2-3) SPARX tutorial may also largely be a demo, see below LKH Solver - (day 4 - pathwalker), required only for the pathwalker tutorial, see below Phenix - (end of day 4) real-space refinement of models

#PYMOL TUTORIAL WIKI INSTALL#

Gorgon - Gorgon Tutorial (day 4) Please install the appropriate binary AND Data-Sets.zip Other Linux variants should be fine, now.

Warning: we are aware of an issue with Gorgon on Ubuntu.

17 or later - For PDB viewing and Segger tutorial (day 4, specific version required) See comments below.Ĭhimera Daily Build Oct. Relion 1.4 (optional, day 2-3) - The Relion session will largely be a demo. Ribosome_Relion.zip Result of Relion tutorialĮMAN/SPARX 2.12 (or snapshot version released after Oct. Tutorial Data You will also need all of the demonstration data, which we will use when going through the tutorials:Ĭompleted Tutorial Projects (large files)īgal-completed-tutorial.zip Result of EMAN high res tutorial (warning, 6 GB download)

Please note that e2refine_split has been improved significantly since 2.12.

Video of selected sessions Our primary video recording mechanism failed to record audio, so we unfortunately have only the EMAN and Modeling tutorials recordedĮMAN2.12 Tutorial - Part 1 (session starts at 4:20 in video)ĮMAN2.12 Tutorial - Part 2 - 2-D Class averagesĮMAN2.12 Tutorial - Part 3 - Starting your first refinementĮMAN2.12 Tutorial - Part 4 - Looking at the results of the first refinementĬompositional and conformational variability in EMAN2.12 - Part 1Ĭompositional and conformational variability in EMAN2.12 - Part 2 Lawson-challenges.pdf - EMDB Challenges - Cathy Lawson Pintilie.pdf - Chimera & Segger - Greg Pintilieīaker-model-building.pdf - Model Building - Matt Baker McmullanDetector.pdf - Direct Detector Technology - Greg McMullan Scheres-heterogeneity.pdf - Methods for Heterogeneity Analysis - Sjors Scheres Ludtke-minitalks.pdf - CTF, Refinement, other topics - Steve Ludtkeīaldwin-orientation.pdf - Orientation and Symmetry - Phil Baldwin Penczek-alignment.pdf - 2D Alignment Theory - Pawel Penczek Mcmullanintro.pdf - Electron Microscopes & Imaging Artifacts - Greg McMullan Ludtke-overview.pdf - Workshop Overview - Steve Ludtke Wah-introduction.pdf - Introduction to the Workshop and NCMI Presentation notes from the Workshop (some of these have not been uploaded yet) Workshop on Single Particle Reconstruction, Structural Variability and Modeling: Oct 30 - Nov 2, 2015